Discovering Semantic Biomedical Relations Utilizing The Web

To realize the vision of a Semantic Web for Life Sciences, discovering relations between resources is essential. It is very difficult to automatically extract relations from Web pages expressed in natural language formats. On the other hand, because of the explosive growth of information, it is difficult to manually extract the relations. In this paper we present techniques to automatically discover relations between biomedical resources from the Web. For this purpose we retrieve relevant information from Web Search engines and Pubmed database using various lexico-syntactic patterns as queries over SOAP web services. The patterns are initially handcrafted but can be progressively learnt. The extracted relations can be used to construct and augment ontologies and knowledge bases. Experiments are presented for general biomedical relation discovery and domain specific search to show the usefulness of our technique.

Read the paper:

Discovering Semantic Biomedical Relations utilizing the Web

by Saurav Sahay, Sougata Mukherjea, Eugene Agichtein, Ernie Garcia, Sham Navathe, Ashwin Ram

ACM Transactions on Knowledge Discovery from Data, 2(1):3, 2008
www.cc.gatech.edu/faculty/ashwin/papers/er-08-01.pdf
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